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Stream biofilm nutrient uptake incubation experiment

Authors: Elizabeth Ogata · Michelle Baker
Owners: Elizabeth Ogata · Michelle Baker · iUTAH Data Manager
Resource type:Generic
Created:Sep 23, 2017 at 5:24 p.m.
Last updated: Jul 05, 2018 at 7 p.m. by Elizabeth Ogata


This resource contains the results of a nutrient uptake incubation experiment conducted at a mountain and urban site on the Logan River in northern Utah. The experiments were performed with biofilms grown for 14-15 days on nutrient diffusing substrates (NDS), 1-oz plastic cups filled with agar and capped with a fritted glass disc. We performed the nutrient uptake experiment by incubating biofilm-colonized discs in clear plastic jars filled with stream water spiked with nitrogen (N) and phosphorus (P) at a series of concentrations. The CSV file "nutrient uptake treatments" lists the treatments used in the nutrient uptake experiment at each site. Biofilms were incubated in situ for 2 hours at midday. Samples for dissolved nutrient analysis were collected from the nutrient treatment solutions used to fill the jars and from each jar at the end of the incubation. The dissolved oxygen concentration in each jar was measured at the start and end of the incubation. We calculated nutrient uptake rates as the rate of loss in water nutrients and net primary production as the change in dissolved oxygen concentration. We measured biofilm biomass as chlorophyll a. The CSV file “nutrient uptake results” contains summary statistics (mean, standard deviation, count) of nutrient uptake rates, net primary production rates, and chlorophyll a concentrations in nutrient uptake treatments at each site. The Word document “nutrient uptake analytical methods” contains the analytical methods used to measure nutrient concentrations.

We also examined biofilm nutrient limitation at each site using NDS. We constructed nutrient limitation NDS by filling 1-oz plastic cups with agar amended with either no nutrients (control), 0.5 M NH4-N (N), 0.5 M PO4-P (P), or 0.5 M NH4-N + 0.5 M PO4-P (N+P). NDS were then capped with a fritted glass disc and placed in the stream at each site during the same period that NDS for the nutrient uptake experiment were deployed. Biofilm biomass was measured as chlorophyll a and ash-free dry mass. The CSV file “nutrient limitation results” contains summary statistics of chlorophyll a concentration and ash-free dry mass in each nutrient treatment at each site. The Word document “nutrient uptake analytical methods” contains the analytical methods used to measure chlorophyll and ash-free dry mass.

Subject Keywords

stream biofilms,nutrient diffusing substrates,nutrients,nutrient uptake,nutrient limitation,nitrogen,water quality,Logan River,iUTAH,phosphorus

How to cite

Ogata, E., M. Baker (2018). Stream biofilm nutrient uptake incubation experiment, HydroShare, http://www.hydroshare.org/resource/159e3fd52a284ec3b32300c6a84df57d

This resource is shared under the Creative Commons Attribution CC BY.


Sharing status:

  • Public Resource  Public
  • Sharable Resource  Shareable



 Coordinate System/Geographic Projection:  WGS 84 EPSG:4326
 Coordinate Units:  Decimal degrees
Place/Area Name: Logan River watershed

North Latitude
East Longitude
South Latitude
West Longitude


 Start Date:
 End Date:


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The people or organizations that created the intellectual content of the resource.

Name Organization Address Phone Author Identifiers
Elizabeth Ogata Utah State University 5305 Old Main Hill, Logan, UT 84321
Michelle Baker Utah State University UT, US
Extended Metadata
Name Value
Observed variables in nutrient uptake results CSV file NO3 uptake rate per area (mg N/m2/hr), PO4 uptake rate per area (mg P/m2/hr), net primary production per area (mg O2/m2/hr), NO3 uptake rate per biomass (mg N/mg Chl/hr), PO4 uptake rate per biomass (mg P/mg Chl/hr), net primary production per biomass (mg O2/mg Chl/hr), chlorophyll a concentration (Chl; mg/m2)
Observed variables in nutrient limitation results CSV file chlorophyll a (Chl; mg/m2), ash-free dry mass (g/m2)


This resource was created using funding from the following sources:
Agency Name Award Title Award Number
National Science Foundation iUTAH-innovative Urban Transitions and Aridregion Hydro-sustainability 1208732


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