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Achieving Reproducible Computational Hydrologic Models by Integrating Scientific Cyberinfrastructures


Authors: Bakinam Tarik Essawy · Jonathan Goodall · Daniel Voce · W Zell · Mohamed Morsy · Jeff Sadler · Zhihao Yuan · Tanu Malik
Owners: Jonathan Goodall
Resource type:Composite Resource
Created:Aug 08, 2018 at 6:20 p.m.
Last updated: Aug 08, 2018 at 6:27 p.m. by Jonathan Goodall

Abstract

This presentation was given at the iEMSs conference held in Fort Collins, CO in June 2018. http://iemss2018.engr.colostate.edu/

Reproducibility of computational workflows is an important challenge that calls for open and reusable code and data, well-documented workflows, and controlled environments that allow others to verify published findings. HydroShare (http://www.hydroshare.org) and GeoTrust (http://geotrusthub.org/), two new cyberinfrastructure tools under active development, can be used to improve reproducibility in computational hydrology. HydroShare is a web-based system for sharing hydrologic data and model resources. HydroShare allows hydrologists to upload model input data resources, add detailed hydrologic-specific metadata to these resources, and use the data directly within HydroShare for collaborative modeling using tools like JupyterHub. GeoTrust provides tools for scientists to efficiently reproduce, track and share geoscience applications by building ‘sciunits,’ which are efficient, lightweight, self-contained packages of computational experiments that can be guaranteed to repeat or reproduce regardless of deployment challenges. We will present a use case example focusing on a workflow that uses the MODFLOW model to demonstrate how HydroShare and GeoTrust can be integrated to easily and efficiently reproduce computational workflows. This use case example automates pre-processing of model inputs, model execution, and post-processing of model output. This work demonstrates how the integration of HydroShare and Geotrust ensures the logical and physical preservation of computation workflows and that reproducibility can be achieved by replicating the original sciunit, modifying it to produce a new sciunit and finally, preserving and sharing the newly created sciunit by using HydroShare's JupyterHub.

Subject Keywords

iemss18,sciunit,reproducibility

How to cite

Essawy, B. T., J. Goodall, D. Voce, W. Zell, M. Morsy, J. Sadler, Z. Yuan, T. Malik (2018). Achieving Reproducible Computational Hydrologic Models by Integrating Scientific Cyberinfrastructures, HydroShare, http://www.hydroshare.org/resource/1fedd80cd20245409a0ea02cc2a1ecf0

This resource is shared under the Creative Commons Attribution CC BY.

 http://creativecommons.org/licenses/by/4.0/
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Authors

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Name Organization Address Phone Author Identifiers
Bakinam Tarik Essawy University of Virginia VA 8034634471
Jonathan Goodall University of Virginia
Daniel Voce UVA HydroInformatics Lab
W Zell
Mohamed Morsy University of Virginia (434) 924-7630
Jeff Sadler University of Virginia
Zhihao Yuan
Tanu Malik

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