Comparing Approaches to Achieve Reproducible Computational Modeling for Hydrological and Environmental Systems
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| Resource type: | Collection Resource | |
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| Created: | Nov 24, 2020 at 7:05 a.m. | |
| Last updated: | Mar 09, 2022 at 3:05 p.m.
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| Citation: | See how to cite this resource |
| Sharing Status: | Public |
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Abstract
This is a collection resource for "Comparing Approaches to Achieve Reproducible Computational Modeling for Hydrological and Environmental Systems" manuscript in Environmental Modeling and Software.
HS-1: Collection Resource for Comparing Approaches to Achieve Reproducible Computational Modeling for Hydrological and Environmental Systems
For SUMMA simulation, we created two SUMMA model instances.
HS-2. Model Instance for the Impact of Stomatal Resistance Parameterizations on ET of SUMMA Model in Aspen stand at Reynolds Mountain East
HS-3. Model Instance for the Impact of Lateral Flow Parameterizations on Runoff of SUMMA Model at Reynolds Mountain East
For SUMMA simulation, we created a SUMMA model program
HS-4: Remote Approach-11: Using HPC Cluster (Rivanna: HPC at University of Virginia) for the reproducibility of SUMMA modeling
There are five HS resources for reproducible approaches.
HS-5. A Virtual Box image that includes five local approaches:
- Approach-1 Compiling the core model software
- Approach-2 Containerizing the core model software only with Docker
- Approach-3 Containerizing all software with Docker
- Approach-4 Containerizing all software with Singularity
- Approach-5 Containerizing all software and modeling workflows with Sciunit
HS-6. Approach-6 Using CUAHSI JupyterHub
HS-7. Approach-7 Using CyberGIS-Jupyter for water
HS-8. Approach-8 Using Sciunit in CUAHSI JupyterHub
HS-9. Approach-9 Using Sciunit in CyberGIS-Jupyter for water
Lastly, we created a notebook for performance tests using the different reproducible approaches.
HS-10. Jupyter notebook for performance test using the different reproducible approaches
In addition, there are three GitHub repositories for reproducible approaches in related resources in the reference section.
Git-1. Approach-10 Using Binder (https://github.com/uva-hydroinformatics/SUMMA_Binder.git)
Git-2. Description of Approach-3 to show how to create Docker environments (https://github.com/uva-hydroinformatics/SUMMA_Docker_Training.git)
Git-3. Description of Approach-4 and 11 to show how to use a Singularity image in HPC (https://github.com/uva-hydroinformatics/SUMMA_Singularity_In_Rivanna.git)
Subject Keywords
Resource Level Coverage
Spatial
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Collection Contents
Related Resources
| This resource is described by | https://github.com/uva-hydroinformatics/SUMMA_Singularity_In_Rivanna.git |
| This resource is described by | https://github.com/uva-hydroinformatics/SUMMA_Docker_Training.git |
| This resource is described by | https://github.com/uva-hydroinformatics/SUMMA_Binder.git |
Credits
Funding Agencies
This resource was created using funding from the following sources:
| Agency Name | Award Title | Award Number |
|---|---|---|
| National Science Foundation | EarthCube Data Capabilities: Collaborative Research: Integration of Reproducible Methods into Community Cyberinfrastructure | ICER-1928369, ICER-1928315 |
How to Cite
This resource is shared under the Creative Commons Attribution CC BY.
http://creativecommons.org/licenses/by/4.0/
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