Aquatic GAMUT Eukaryote Metagenomics
|Authors:||Erin Jones · Zach Aanderud|
|Owners:||iUTAH Data Manager · Erin Jones|
|Created:||Jul 31, 2017 at 6:10 p.m.|
|Last updated:||Jul 31, 2017 at 6:19 p.m. by Erin Jones|
This dataset contains .txt (tab delimited) files of OTU (operational taxonomic units) classifications for eukaryotes at iUTAH GAMUT sites in three watersheds in May of 2015. Briefly, water column samples were filtered on 0.2 um membrane filters, which were dissolved and processed with MOBIO Power Soil DNA extraction kits. We Illumina Hi-Seq and then MG-RAST to generate OTU classifications.
metagenomics,microbial ecology,water quality,Rank abundance,iUTAH
How to cite
This resource is shared under the Creative Commons Attribution CC BY.http://creativecommons.org/licenses/by/4.0/
|Coordinate System/Geographic Projection:||WGS 84 EPSG:4326|
|Coordinate Units:||Decimal degrees|
ContentYou do not have permission to see these content files. Please contact the Authors if you wish to obtain access.
|Erin Jones||Brigham Young University|
|Zach Aanderud||Brigham Young University||8014224220|
|Observed Variables||Rank abundance|
|Variable Description||Relative abundance of bacterial community taxa in water column|
|Data Processing Method||Sequences have been processed using MOTHUR (Schloss et al. 2009).|
|Data Collection Method||Streamwater aseptically vacuum filtered in the field or lab using autoclaved Nalgene filter cups and 47 mm 0.2 um membrane filters, were stored on dry ice or liquid nitrogen until extracted with MoBIO PowerMax Soil DNA kits. PCR-amplified 16S rDNA samples were sequenced using BYU’s DNA Sequencing Center (454-Pyrosequencing or Hi-Seq).|
This resource was created using funding from the following sources:
|Agency Name||Award Title||Award Number|
|National Science Foundation||iUTAH-innovative Urban Transitions and Aridregion Hydro-sustainability||1208732|
Please wait for the process to complete.