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Sciunit package to containerize the collaborative hydrologic modeling from three Jupyter Notebook(getdata, analysis, and outputviz) as an example of SUMMA


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Created: May 24, 2019 at 4:04 p.m.
Last updated: Dec 27, 2019 at 5:40 p.m.
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Abstract

This is an example of how to create sciunit package from Jupyter Notebooks. For this example, I divided a well organized Jupyer Notebook to general three steps such as 1) get data, 2) analysis, 3) output visualization. So I recreated (1) getdata.ipynb, (2) analysis.ipynb, (3) output_viz.ipynb from a well organized Jupyter Notebook.
Then, we can create a sciunit package using "1_creating_sciunit_package_using_three_step_getdata_analysis_outputviz_jupyter_notebook.ipynb".
From the previous step, we can create a sciunit package and upload it on HydroShare as a new resource. In addition, we will add "2_testing_sciunit_repeat_and_visualization.ipynb" into new HydroShare resource. After that, we open new HydroShare resource, and use "2_testing_sciunit_repeat_and_visualization.ipynb" to repeat sciunit package to test reproducibility.

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References

This resource belongs to the following collections:
Title Owners Sharing Status My Permission
2019 EarthCube Conference Demo presentation material for advanced collaborative modeling framework Young-Don Choi  Public &  Shareable Open Access

Credits

Funding Agencies

This resource was created using funding from the following sources:
Agency Name Award Title Award Number
National Science Foundation EarthCube Building Blocks: Collaborative Proposal: GeoTrust: Improving Sharing and Reproducibility of Geoscience Applications ICER-1639655, ICER-1639759, ICER-1639696
National Science Foundation Collaborative Research: SI2-SSI: Cyberinfrastructure for Advancing Hydrologic Knowledge through Collaborative Integration of Data Science, Modeling and Analysis OAC-1664061, OAC-1664018, OAC-1664119

How to Cite

CHOI, Y. (2019). Sciunit package to containerize the collaborative hydrologic modeling from three Jupyter Notebook(getdata, analysis, and outputviz) as an example of SUMMA, HydroShare, http://www.hydroshare.org/resource/99ebc7d2633e4327ae140bc2aa23b82f

This resource is shared under the Creative Commons Attribution CC BY.

 http://creativecommons.org/licenses/by/4.0/
CC-BY

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